Software Tools For Molecular Microscopy/Utilities
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Utilities[edit | edit source]
BBHP/Suprim add-ons[edit source]
- Website: http://coan.burnham.org/other-projects
- Contact: coan@burnham.org
- Two plugins for the Burnham-Brandeis Helical Package and/or Suprim, tkfilter for tomogram symmetry filtering and tkstraighten for boxing and straightening helical filaments.
- Support: Operating systems: Image format support: MRC
- Cost: Free for academic users
- Primary Publication to Cite:
- unpublished
crop[edit source]
- Website: http://emlab.rose2.brandeis.edu/software
- Current version: 1.0
- Contact: niko @brandeis.edu
- Program for cutting sections out of 2D and 3D density maps.
- Support: Operating systems: Linux/Mac Image format support: MRC
- Cost: Free/Open Source, GPL
- Primary Publication to Cite:
- unpublished
diffmap[edit source]
- Website: http://emlab.rose2.brandeis.edu/software
- Current version: 1.12
- Contact: niko @brandeis.edu
- Program to calculate difference maps between two density maps.
- Support: Operating systems: Linux/Mac Image format support: MRC
- Cost: Free/Open Source, GPL
- Primary Publication to Cite:
- unpublished
em2em[edit source]
- Website: http://www.imagescience.de/em2em.html
- Contact: em2em@ImageScience.de
- Program to convert images (2D images and 3D volumes) from/to formats typically used in the EM community.
- Support: Operating systems: Most platforms (Linux/Unix, Mac OS X (intel), MS Windows) Image format support: Most formats (IMAGIC, Spider, CCP4, MRC, CCP4, TIFF, etc.)
- Cost: Free
- Primary Publication to Cite:
- unpublished
Matlab functions for 3dEM file formats[edit source]
- Website: http://www.mathworks.com/matlabcentral/fileexchange/27021
- Contact: Fred Sigworth
- Support: Operating systems: MATLAB-supported systems Image format support: Imagic, MRC and DM3
- Cost: Free/Open Source, BSD license
- Written In: MATLAB
- Primary Publication to Cite:
- Unpublished
MoniTEM[edit source]
- Website: http://cores.imp.ac.at/monitem
- Current version: 1.0.1
- Contact: Guenter Resch <guenter.resch@imba.oeaw.ac.at>
- A software tool for the Tecnai and Titan platform of TEMs designed to increase system uptime by constant monitoring.
- Support: Operating systems: Windows Image format support: n/a
- Cost: Free
- Primary Publication to Cite:
- Brunner, M. J., and Resch, G. P. (2009): Automated monitoring to reduce electron microscope downtime. Ultramicroscopy 109, 1389-92.