This book serves as a manual and reference for inferring phylogenies. It includes relevant algorithms to encourage programming and tutorials for existing programs. It is intended for students and practicing scientists.
- Alignment Preparation
- Trees, heuristics, and more
- Parsimony Reconstruction
- Distance Method Reconstruction
- Likelihood Reconstruction
- Bayesian Reconstruction
Note to Editors
Any editors are welcome, but try to use the development page before doing so.