MINC/VisualTools/brain-view

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brain-view is a tool for visualising statistics on MINC object files.

Viewing an object file[edit | edit source]

   $ brain-view2 aug30_H149_gray_surface_left_81920.obj


Overlaying data[edit | edit source]

CSV data can be overlayed onto the vertices of the object mesh. The file must have one row per vertex and have the same order as vertices in the object. 

   $ brain-view2 aug30_H149_gray_surface_left_81920.obj  aug30_H149_native_rms_tlink_20mm_left.txt



Clicking any point on the surface will bring the index of the vertex in the object file, and the value of the overlayed data in the Resources pane.

A close up of the brain-view2 interface showing the index for a point on the surface mesh recently selected, and the value of the overlayed statistic at that point (in this case, cortical thickness)

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